To investigate the effectiveness of selenium (Se) and Se nanoparticles (Se-NPs) in improving biochemical and physiological characteristics of savoury in drought stress conditions, a factorial experiment based on the completely randomised design with three replications was used. Results demonstrate that Se-NPs considerably enhanced several biochemical parameters, such as relative water content (RWC), antioxidant enzymes activity, and total soluble protein in drought and normal conditions. At the stress level from 100 to 40% of field capacity, a gradual decrease in chlorophyll and CARs contents was observed and under stress and normal conditions, the application of Se-NPs (10 mg L−1) led to an increase in the content of pigments. Total soluble protein, total phenolic and flavonoid contents showed significant increases in plants treated with Se-NPs under drought stress. Generally, the use of Se-NPs in drought stress conditions can be effective in improving the growth, biochemical, and physiological characteristics of savoury.