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Title Spodium bonding and other non-covalent interactions assisted supramolecular aggregation in a new mercury(II) complex of a nicotinohydrazide derivative
Type JournalPaper
Keywords Spodium bond Mercury Crystal structure X-ray crystallography DFT
Abstract In this work we report a new Hg(II) coordination compound [Hg(HL)(SCN)2], which was readily obtained from a mixture of Hg(SCN)2 and N'-(1-(pyridin-2-yl)ethylidene)nicotinohydrazide (HL). The metal cation is chelated by the organic ligand in a N,N',O tridentate manner through the 2-Py and amide nitrogen donors, and carbonyl oxygen atom. The coordination sphere is filled by the sulfur donors of two thiocyanate anions, thus yielding a pentacoordinated geometry, which is best described as being about 64% along the pathway of distortion from the ideal square pyramidal toward trigonal bipyramidal structure. In addition, the metal center forms two types of the Hg⋯N spodium bonds, which are formed with the 3-Py nitrogen atom of a symmetry related molecule and with the nitrogen atom of one thiocyanate ligand of another molecular unit. These Hg⋯N spodium bonds enlarge the coordination environment of the metal cation in between a capped trigonal prism close to pentagonal bipyramid. In addition a 1D zig-zag-like polymeric chain is formed, which is further reinforced by bilateral C–H⋯O hydrogen bonds. These chains are interlinked through N–H⋯N hydrogen bonds and additionally glued by π⋯π interactions between the 2-Py rings. Thus, considering all the Hg⋯N spodium and N–H⋯N hydrogen bonds, a supramolecular 2D layer is formed with a binodal 3,4-connected hcb topology. The 2D layers are interlinked through a myriad of π⋯π interactions. According to the Hirshfeld surface analysis, the crystal packing of [Hg(HL)(SCN)2] is mainly characterized by intermolecular H⋯H, H⋯C, H⋯N and H⋯S contacts comprised from 15.9 to 22.3%, followed by less significant H⋯O, C⋯C, C⋯N, N⋯S and Hg⋯N contacts comprised from 2.8 to 6.3%. The intermolecular H⋯C, H⋯N, H⋯O, H⋯S and C⋯C contacts are highly favoured in the molecular surface of [Hg(HL)(SCN)2], while the N⋯S contacts are less favoured, and remaining contacts are significantly impoverished. Finally, density functional theory (DFT) calculations at the
Researchers Damir A Safin (Not In First Six Researchers), Antonio Frontera (Not In First Six Researchers), Maria G. Babashkina (Fifth Researcher), Atash V. Gurbanov, (Fourth Researcher), Barbara Mirosław (Third Researcher), Ennio Zangrando, (Second Researcher), Ghodrat Mahmoudi (First Researcher)